diff --git a/ChangeLog b/ChangeLog
index b6f182425a3720ea4e9a07526991853c87b9d3ca..9d6706aae4df9eeb063d8072fd6fd56df4cc456f 100644
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,3 +1,12 @@
+2012-05-09  Nick Clifton  <nickc@redhat.com>
+	    Paul Smith  <psmith@gnu.org>
+
+	PR bootstrap/50461
+	* configure.ac (mpfr-dir): When using in-tree MPFR sources
+	allow for the fact that from release v3.1.0 of MPFR the source
+	files were moved into a src sub-directory.
+	* configure: Regenerate.
+
 2012-05-07  Janne Blomqvist  <jb@gcc.gnu.org>
 
 	* configure.ac: Bump minimum MPFR version to 2.4.0.
diff --git a/configure b/configure
index faabb33c444b786ac7d30d7baad90aa720fbf8e6..083f2ce2044832d9ffc24f6ffcbdeb142e421b24 100755
--- a/configure
+++ b/configure
@@ -5204,9 +5204,16 @@ if test "x$with_mpfr_lib" != x; then
   gmplibs="-L$with_mpfr_lib $gmplibs"
 fi
 if test "x$with_mpfr$with_mpfr_include$with_mpfr_lib" = x && test -d ${srcdir}/mpfr; then
-  gmplibs='-L$$r/$(HOST_SUBDIR)/mpfr/'"$lt_cv_objdir $gmplibs"
-  gmpinc='-I$$r/$(HOST_SUBDIR)/mpfr -I$$s/mpfr '"$gmpinc"
-  extra_mpc_mpfr_configure_flags='--with-mpfr-include=$$s/mpfr --with-mpfr-lib=$$r/$(HOST_SUBDIR)/mpfr/'"$lt_cv_objdir"
+  # MPFR v3.1.0 moved the sources into a src sub-directory.
+  if test -d ${srcdir}/mpfr/src; then
+    gmplibs='-L$$r/$(HOST_SUBDIR)/mpfr/src/'"$lt_cv_objdir $gmplibs"
+    gmpinc='-I$$r/$(HOST_SUBDIR)/mpfr/src -I$$s/mpfr/src '"$gmpinc"
+    extra_mpc_mpfr_configure_flags='--with-mpfr-include=$$s/mpfr/src --with-mpfr-lib=$$r/$(HOST_SUBDIR)/mpfr/src/'"$lt_cv_objdir"
+  else
+    gmplibs='-L$$r/$(HOST_SUBDIR)/mpfr/'"$lt_cv_objdir $gmplibs"
+    gmpinc='-I$$r/$(HOST_SUBDIR)/mpfr -I$$s/mpfr '"$gmpinc"
+    extra_mpc_mpfr_configure_flags='--with-mpfr-include=$$s/mpfr --with-mpfr-lib=$$r/$(HOST_SUBDIR)/mpfr/'"$lt_cv_objdir"
+  fi
   # Do not test the mpfr version.  Assume that it is sufficient, since
   # it is in the source tree, and the library has not been built yet
   # but it would be included on the link line in the version check below
diff --git a/configure.ac b/configure.ac
index 0159f5e877f8fd2679dfc16337299b6919618459..378e9f5b68ef2ec49e27ec571bc5d885af5700b5 100644
--- a/configure.ac
+++ b/configure.ac
@@ -1289,9 +1289,16 @@ if test "x$with_mpfr_lib" != x; then
   gmplibs="-L$with_mpfr_lib $gmplibs"
 fi
 if test "x$with_mpfr$with_mpfr_include$with_mpfr_lib" = x && test -d ${srcdir}/mpfr; then
-  gmplibs='-L$$r/$(HOST_SUBDIR)/mpfr/'"$lt_cv_objdir $gmplibs"
-  gmpinc='-I$$r/$(HOST_SUBDIR)/mpfr -I$$s/mpfr '"$gmpinc"
-  extra_mpc_mpfr_configure_flags='--with-mpfr-include=$$s/mpfr --with-mpfr-lib=$$r/$(HOST_SUBDIR)/mpfr/'"$lt_cv_objdir"
+  # MPFR v3.1.0 moved the sources into a src sub-directory.
+  if test -d ${srcdir}/mpfr/src; then
+    gmplibs='-L$$r/$(HOST_SUBDIR)/mpfr/src/'"$lt_cv_objdir $gmplibs"
+    gmpinc='-I$$r/$(HOST_SUBDIR)/mpfr/src -I$$s/mpfr/src '"$gmpinc"
+    extra_mpc_mpfr_configure_flags='--with-mpfr-include=$$s/mpfr/src --with-mpfr-lib=$$r/$(HOST_SUBDIR)/mpfr/src/'"$lt_cv_objdir"
+  else
+    gmplibs='-L$$r/$(HOST_SUBDIR)/mpfr/'"$lt_cv_objdir $gmplibs"
+    gmpinc='-I$$r/$(HOST_SUBDIR)/mpfr -I$$s/mpfr '"$gmpinc"
+    extra_mpc_mpfr_configure_flags='--with-mpfr-include=$$s/mpfr --with-mpfr-lib=$$r/$(HOST_SUBDIR)/mpfr/'"$lt_cv_objdir"
+  fi
   # Do not test the mpfr version.  Assume that it is sufficient, since
   # it is in the source tree, and the library has not been built yet
   # but it would be included on the link line in the version check below